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Resources provided by the Department of Medical Bioinformatics
Below we provide resources to web services and tools resulting from our own research and development projects.
CYTOMER is an ontology on organs/tissues, cell types, physiological systems and developmental stages focusing on the human system.
EndoNet is a database about the components of endocrine networks and their relations focusing on the endocrine cell-to-cell signaling in the human body.
This project classifies the transcription factor based on their DNA binding domains TFclass covers TFs from mammalian focusing on human and rodent.
CandActCTFR - a CFTR protein specific curated compound data base
CF-disease map - an interactive systems medicine model, with a focus on CFTR protein maturation
This project is dedicated to identify potentially collaborating transcription factors (TFs) for a set of co-regulated genes based on the location of their binding sites.
TF Spiker is a new method to exploit the distributions of individual TFBSs in the promoter regions of co-expressed genes in order to identify functionally important.
These tools provide access and visualization for ontologies inside your own applications and workflows.
The Nucleosome Formation (NF) score is a genome-wide resource to analyze the sequence-intrinsic support for nucleome positioning.