Dissertations

Jingyu Yang
An automated data integration platform for interpreting genomic data and reporting treatment options in molecular tumor boards
PhD Thesis, Georg August University (2024)

Sahrhage M.
Investigating the Importance of DNA Sequence for Nucleosome Positioning with Means of Machine Learning
PhD Thesis, Georg August University (2023)

Vinhoven, L.
Cystic Fibrosis as a model use case for implementing cell based disease models in systems medicine 
PhD Thesis, Georg August University (2022)

Auer, F.
A knowledge base for generating patient-specific pathways for individualized treatment decisions in clinical applications
PhD Thesis, Georg August University (2022)

Wlochowitz, D.
A Bioinformatics Pipeline for Identifying Dysregulated Pathways in Cancer from Comparative RNA-Seq Transcriptome Analysis
PhD Thesis, Georg August University Göttingen (2022)

Purushothama M.K.,
Machine Learning and statistical analysis to identify determinants of survival in primary glioblastoma using genome wide expression studies
PhD thesis, Georg August University Göttingen (2022) 

Chereda H.,
Explaining decisions of graph convolutional neural networks for analyses of molecular subnetworks in cancer
PhD thesis, Georg August University Göttingen (2022)

Haubrock M.,
Prediction, analysis and significance of characteristic transcription factor binding sites and their potential master control function for the transcriptional gene regulation
PhD Thesis, Georg August University Göttingen (2021)

Hammoud Z.,
Using n-layer graph models for representing and transforming knowledge on biological pathways
PhD Thesis, Georg August University Göttingen (2021)

al Alachram, H.,
Knowledge Integration and Representation for Biomedical Analysis
PhD Thesis, Georg August University Göttingen (2021)

Sitte, M.,
Network Based Integration of Proteomic and Transcriptomic Data: Study of BCR and WNT11 Signaling Pathways in Cancer Cells
PhD Thesis, Georg August University Göttingen (2020)

Daou R.,
Constructing and Analyzing Temporal Regulatory Cascades
PhD Thesis, Georg August University Göttingen (2020)

Meckbach C.:
Information theoretical approaches for the identification of potentially cooperating transcription factors
PhD Thesis, Georg August University Göttingen (2019)

Perera-Bel J.:
Guiding Cancer Therapy: Evidence-driven Reporting of Genomic Data
PhD Thesis, Georg August University Göttingen (2018)

Wolf, A.
Analysis of expression profile and gene variation via development of methods for Next Generation Sequencing data
PhD Thesis, Georg August University Göttingen (2018)

Wachter, A.:
Data Integration of High-Throughput Proteomic and Transcriptomic Data based on Public Database Knowledge
PhD Thesis, Georg August University Göttingen (2017)

Bayerlova, M.:
Pathway and network analyses in context of Wnt signaling in breast cancer
PhD Thesis, Georg August University (2015)

Bhar, A.:
Application of a Novel Triclustering Method in Analyzing Three Dimensionaol Transcriptomics Data
PhD Thesis, Georg August University Göttingen (2015) 

Dönitz, J.:
Development and application of ontologies for biological applications
PhD Thesis, Georg August University Göttingen (2015)

Leha A.:
Statistical Methods to Enhance Clinical Prediction with High-Dimensional Data and Ordinal Response
PhD Thesis, Georg August University Göttingen (2015)

von der Heide, S.
Unravelling Drug Resistance Mechanisms in Breast Cancer
PhD Thesis, Georg August University Göttingen (2015)

Kramer F.
Integration of Pathway Data as Prior Knowledge into Methods for Network Reconstruction
PhD Thesis, Georg-August-University Göttingen (2014)

Zeidler, S.:
Detektion und Analyse synergistischer Einflüsse multipler Stimuli auf zelluläre Signaltransduktionsnetzwerke in Säugetieren
PhD Thesis, Georg August University Göttingen (2013) 

Gade S.:
Graph based fusion of high-dimensional gene- and microRNA expression data
PhD Thesis, Georg August University Göttingen (2012)

Bender C.:
Sytematic analysis of time resolved high-throughput data using stochastic network inference methods.
Ruperto-Carola University of Heideberg (2011)

Goemann, B.:
Modellierung regulatorischer Netzwerke von Säugetieren und Einsatz von Methoden zur strukturellen Analyse und Identikation von Kernkomponenten
PhD Thesis, Georg August University Göttingen (2011) 

Johannes M.:
Integration of Prior Biological Knowledge into Support Vector Machines
PhD Thesis, Ruperto-Carola University of Heidelberg (2011)

Degenhardt, J.:
Analyse biologischer Signaltransduktionsnetzwerke auf der Grundlage von Genexpressionsdaten
PhD Thesis, Georg August University Göttingen (2009) 

Shelest, E.:
Genetic networks of antibacterial responses of eukaryotic cells. Bioinformatics analysis and modeling
PhD Thesis, Technical University of Braunschweig (2006). 

Sauer, T.:
Evaluierung des phylogenetischen Footprintings und dessen Anwendung zur verbesserten Vorhersage von Transkriptionsfaktor-Bindestellen
PhD Thesis, Georg August University Göttingen (2006).